TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SelO selenoproteinO homolog [Ectocarpus siliculosus]
         (672 letters)

Database: H.arabidopsidis/genome.fa 
           5422 sequences; 67,459,135 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABWE01000508.1| Hyaloperonospora parasitica strain Emoy2 v-7....   399   e-111
gb|ABWE01003611.1| Hyaloperonospora parasitica strain Emoy2 v-7....   300   4e-81
gb|ABWE01003941.1| Hyaloperonospora parasitica strain Emoy2 v-7....   128   3e-29

>gb|ABWE01000508.1| Hyaloperonospora parasitica strain Emoy2 v-7.0.1_Cont21.32, whole
             genome shotgun sequence
          Length = 38593

 Score =  399 bits (1025), Expect = e-111
 Identities = 260/654 (39%), Positives = 346/654 (52%), Gaps = 87/654 (13%)
 Frame = +1

Query: 106   TLPFDNRVIRELPVDPITDNYVRR-VENACFSIVAPDPVVKPVMVAASNSALGLLGLAA- 163
             T  FDN V+RELP+D    N VR  +  ACFS V P P+  P +V  S SAL L+G    
Sbjct: 12646 TSRFDNAVLRELPLDTEPRNGVRSAIPGACFSRVTPTPIASPELVVISPSALALVGFVLT 12825

Query: 164   ------------------EEGQREDA--------AEYFSGNKLMPGAQPHAHAYCGHQFG 197
                               + G +ED             +GN+L+PG++  A  YCGHQFG
Sbjct: 12826 DHLIKKASNLKIDTDNQEDSGNKEDEPFQSIDSLVPILAGNQLLPGSETAAQCYCGHQFG 13005

Query: 198   SFAGQLGDGAAMYLGEVEGPSG-RWEIQFKGAGLTPYSRSADGRKVLRSSIREFLCSEAM 256
              F+GQLGDGAA+YLGEV   S  RWE+Q KG+GLTPYSR+ADGRKVLRS++REFLCSE M
Sbjct: 13006 YFSGQLGDGAALYLGEVVSESNDRWELQLKGSGLTPYSRTADGRKVLRSTLREFLCSENM 13185

Query: 257   HFLGIPTTRAAALVTS-DTKVRRDVFYTGNVIQERASIVTRLAPTFLRFGSFEIFKPRDP 315
               LG+PTTRA ++V S +T+V RDVFY GN   E  ++VTR+A +FLRFGSFEIFK +D 
Sbjct: 13186 SALGVPTTRAGSVVVSRETQVLRDVFYNGNAKMEPTAVVTRIAKSFLRFGSFEIFKEQDQ 13365

Query: 316   RTGRDGPSAG---NDALRLQMLEYAIGRFFPGAAAAGPEGSKARYLAMYEEAVRSTAELV 372
              +GR GPSA     + +  +ML++ I ++FP        G K +Y   Y E VR TA LV
Sbjct: 13366 LSGRAGPSAHLNYKEEMMKRMLDFTIKQYFPEI-----NGDK-KYEQFYNEVVRRTATLV 13527

Query: 373   AKWQCVGFTHGVLNTDNMSILGLTIDYGPYGFMDFFDPKFVPNGSDGGGRYSYERQPEMC 432
             AKWQ VGF HGVLNTDNMSI+G T+DYGP+GFM+ FDPK + N SD  GRY YE QPE+C
Sbjct: 13528 AKWQTVGFCHGVLNTDNMSIVGDTLDYGPFGFMEHFDPKHICNTSDDQGRYRYEVQPEIC 13707

Query: 433   KWNLHKFAEAVAPALPLSDSTAALEKYDGLFKGYYEEGMRRKLGLFSVE--EDDDGLFES 490
             KWN    A+ +      ++    L+ +D +++  Y   MR KLGL +     +D  L  +
Sbjct: 13708 KWNCTVLADQLGLVTDRAELDPGLKAFDEIYEEEYMRLMREKLGLSAQRGCTEDKALVNT 13887

Query: 491   LFATMADTSADFTGTFRELAQL---VPGGDVD-------AVSKALAAQCAGPKIKAKALR 540
             LF  +  T ADFT  FR L++L     GG  +       AVS+ LA Q           +
Sbjct: 13888 LFDVLTHTGADFTCAFRILSKLDAYDSGGSHEQMLDQLVAVSETLAEQ-----------K 14034

Query: 541   RAVDIGRPSIPPQQLQGLWAMAQENPEALAQRFSAPKDAVIAELREEMQKLSNYDAA--Q 598
             R ++     I   Q+     + Q +P    Q    P  A++A+++   +     DA    
Sbjct: 14035 RKLEQASSGISDAQINMCSTLLQNDPRRARQYGITP--ALLAQMKATREAKRTLDATTDD 14208

Query: 599   QRLKDMEALEEDGXE--------------------------------------AIEDAEK 620
             +RL  +    ED  E                                      AI+ A +
Sbjct: 14209 ERLSSVRTAWEDWIEVYVLRIKDEGTAASDAERRNRMLQVNPLFVLRNHVAQKAIDLAHQ 14388

Query: 621   GDFSGVQRVLRLLESPYDPPADDGEGSSSPGGKDYLRATPD--WAADLVCTCSS 672
             GD+ GV  +  L+  P+D P D+         +D + A P    AA L  +CSS
Sbjct: 14389 GDYDGVGHIFELVTHPFDEPRDE---------RDLVYAQPQDPSAAPLCVSCSS 14523


>gb|ABWE01003611.1| Hyaloperonospora parasitica strain Emoy2 v-7.0.1_Cont2336.2, whole
            genome shotgun sequence
          Length = 1581

 Score =  300 bits (769), Expect = 4e-81
 Identities = 194/460 (42%), Positives = 256/460 (55%), Gaps = 8/460 (1%)
 Frame = -2

Query: 79   VTARPASRTAMSTAVDAAATCSSSTLDTLPFDNRVIRELPVDPITDNYVRRVENACFSIV 138
            +TARP SR   S  +D   T ++ TLD+L F NR  R              ++    + V
Sbjct: 1484 LTARPGSRR*-SVCMD---TTTAITLDSLEFTNRFAR--------------LDGPFHAQV 1359

Query: 139  APDPVVKPVMVAASNSALGLLGLAAEEGQRE-DAAEYFSGNKLMPGAQPHAHAYCGHQFG 197
             P P+ +  ++  +    G LGL A    R+ D     +GN+ + G    A  Y GHQFG
Sbjct: 1358 EPQPLSEVRLLHLNAQLAGQLGLDAGAAARDPDFVAAMAGNRKIAGGAYVASVYAGHQFG 1179

Query: 198  SFAGQLGDGAAMYLGEVEGPSG-RWEIQFKGAGLTPYSRSADGRKVLRSSIREFLCSEAM 256
            +   QLGDG A  +GEV  PSG ++E+Q KG+G TP+SR ADGR VLRSSIRE+LCSEAM
Sbjct: 1178 TLVPQLGDGRANLIGEVLTPSGEQFELQLKGSGQTPFSRFADGRAVLRSSIREYLCSEAM 999

Query: 257  HFLGIPTTRAAALVTSDTKVRRDVFYTGNVIQERASIVTRLAPTFLRFGSFEIFKPRDPR 316
            H LGIPTTRA +LV +   V+R+ F       ERA++V R+AP+F+RFG FE F  R+  
Sbjct: 998  HALGIPTTRALSLVGASDPVQRERF-------ERAAVVCRVAPSFVRFGHFEYFYFRNR- 843

Query: 317  TGRDGPSAGNDALRLQMLEYAIGRFFPGAAAAGPEGSKARYLAMYEEAVRSTAELVAKWQ 376
                     ++ +R Q+ ++ I   +P  A     G   RY A   E V+ TA L+A+WQ
Sbjct: 842  ---------HEEIR-QLADHVIEAHYPHLA-----GFPERYAACLSEIVQRTARLMAQWQ 708

Query: 377  CVGFTHGVLNTDNMSILGLTIDYGPYGFMDFFDPKFVPNGSDGGGRYSYERQPEMCKWNL 436
             VGF HGV+NTDNMS+LGLTIDYGPYGF+D FD   + N SD GGRY+Y+RQP + +WN 
Sbjct: 707  SVGFCHGVMNTDNMSVLGLTIDYGPYGFLDGFDAHHICNHSDEGGRYAYDRQPVIGQWNC 528

Query: 437  HKFAEAVAPAL------PLSDSTAALEKYDGLFKGYYEEGMRRKLGLFSVEEDDDGLFES 490
             K  +A  P L       +  + A L +Y   +        RRKLGL S +E+D  L   
Sbjct: 527  SKLLQATLPLLHEDPDQSVEIANAILTRYPADYMNQMMSLWRRKLGLVSEQEEDRELINR 348

Query: 491  LFATMADTSADFTGTFRELAQLVPGGDVDAVSKALAAQCA 530
                +    +DFT TFR LA L  G D  A    L  Q A
Sbjct: 347  FLNLLDKGKSDFTRTFRALANLRDGDDKPAKRDELLDQAA 228


>gb|ABWE01003941.1| Hyaloperonospora parasitica strain Emoy2 v-7.0.1_Cont1166.3, whole
           genome shotgun sequence
          Length = 1343

 Score =  128 bits (322), Expect = 3e-29
 Identities = 100/310 (32%), Positives = 139/310 (44%), Gaps = 11/310 (3%)
 Frame = +1

Query: 365 VRSTAELVAKWQCVGFTHGVLNTDNMSILGLTIDYGPYGFMDFFDPKFVPNGSDG-GGRY 423
           VR     +A W  VGF HGV+NTDNMSILGLTIDYGPYG++D FDP + PN +D  G RY
Sbjct: 55  VRVRRS*IAHWMRVGFVHGVMNTDNMSILGLTIDYGPYGWVDNFDPGWTPNTTDAQGRRY 234

Query: 424 SYERQPEMCKWNLHKFAEAVAPALPLS-DSTAALEKYDGLFKGYYEEGMRRKLGLFSVEE 482
            + RQP++ +WNL + AEA++  LP   + T +L  +D ++       +  K G    ++
Sbjct: 235 CFGRQPDIARWNLERLAEALSTILPDGHELTDSLRVFDQMYVRELTTALANKFGFNQWQD 414

Query: 483 DDDGLFESLFATMADTSADFTGTFRELAQLVPGGDVD---------AVSKALAAQCAGPK 533
            D  L   +F  M     D T  F +LA+L    D+          A   A   Q  G  
Sbjct: 415 SDGELINDIFELMQRAEVDQTLFFTQLAKL----DISQPQLATLEAAFYTAHGLQHFGKD 582

Query: 534 IKAKALRRAVDIGRPSIPPQQLQGLWAMAQENPEALAQRFSAPKDAVIAELREEMQKLSN 593
           I+A   R A  +    + P+  Q L  M+  NP                     +  L N
Sbjct: 583 IQAWLERYAQRVQASGLTPE--QRLQKMSTANP---------------------VYVLRN 693

Query: 594 YDAAQQRLKDMEALEEDGXEAIEDAEKGDFSGVQRVLRLLESPYDPPADDGEGSSSPGGK 653
           Y A                EAI+ A  GD S +  +L +L  PY         +  PG +
Sbjct: 694 YLA---------------QEAIDLATTGDTSRLLELLEVLRHPY---------TIQPGKE 801

Query: 654 DYLRATPDWA 663
            + +  PDWA
Sbjct: 802 MFAQKRPDWA 831


  Database: H.arabidopsidis/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 67,459,135
  Number of sequences in database:  5422
  
Lambda     K      H
   0.317    0.132    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,434,962
Number of Sequences: 5422
Number of extensions: 736186
Number of successful extensions: 4971
Number of sequences better than 1.0e-05: 3
Number of HSP's better than  0.0 without gapping: 587
Number of HSP's successfully gapped in prelim test: 335
Number of HSP's that attempted gapping in prelim test: 3812
Number of HSP's gapped (non-prelim): 2136
length of query: 672
length of database: 22,486,378
effective HSP length: 112
effective length of query: 560
effective length of database: 21,879,114
effective search space: 12252303840
effective search space used: 12252303840
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 119 (50.4 bits)